Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7870

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16237 and 16238 are separated by 384 nucleotides16238 and 16239 are separated by 504 nucleotides mRNA_7869: 16237 - KOG4366 Predicted thioesterase, at 1,265,046 to 1,266,017 16237 mRNA_7870: 16238 - HMMPfam-Putative S-adenosyl-L-methionine-dependent methyltransferase-PF02636,SUPERFAMILY--SSF53335, at 1,266,402 to 1,268,243 16238 mRNA_7871: 16239 - HMMPfam-NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit-PF10785,HMMPfam-C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit-PF12853, at 1,268,748 to 1,269,594 16239

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,265,894 + 16237 mRNA_7869 0.87 -1.4
1,266,006 - -1.5
1,266,016 - -0.7
1,266,040 - -1.8
1,266,051 + -0.5
1,266,143 + -0.2
1,266,151 - -2.0
1,266,154 - +0.4
1,266,165 - +2.5
1,266,172 + +1.5
1,266,282 + -1.6
1,266,302 + +0.4
1,266,307 + -0.7
1,266,311 - +2.0
1,266,318 - +1.5
1,266,318 + +0.2
1,266,319 - -1.3
1,266,330 + -1.6
1,266,331 - +0.5
1,266,361 - +0.1
1,266,380 - +1.0

Or see this region's nucleotide sequence