Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7927

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16294 and 16295 are separated by 452 nucleotides16295 and 16296 are separated by 291 nucleotides mRNA_7926: 16294 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 36,892 to 37,805 16294 mRNA_7927: 16295 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 38,258 to 39,116 16295 mRNA_7928: 16296 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 39,408 to 40,571 16296

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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37,269 + 16294 mRNA_7926 0.41 -1.2
37,693 + 16294 mRNA_7926 0.88 +0.7
37,709 + 16294 mRNA_7926 0.89 -2.2
37,843 - -0.1
37,990 + +0.2
37,993 - +1.4
37,993 - +0.8
37,993 - -0.9
37,996 + -0.5
37,998 - -0.0
38,009 + +0.1
38,094 + +0.7
38,140 + +1.3
38,146 - -0.1
38,168 + +1.4
38,173 + +1.2
38,175 - +1.4
38,205 + +1.1
38,274 + -0.3
38,288 + +0.0
38,309 + +0.2
38,556 + 16295 mRNA_7927 0.35 -1.3
38,665 + 16295 mRNA_7927 0.47 -0.1
38,726 - 16295 mRNA_7927 0.54 -0.5
38,735 - 16295 mRNA_7927 0.56 -0.1
38,741 + 16295 mRNA_7927 0.56 -1.2
38,743 + 16295 mRNA_7927 0.56 -0.1
38,820 + 16295 mRNA_7927 0.65 -0.7
38,822 - 16295 mRNA_7927 0.66 +0.4
38,840 + 16295 mRNA_7927 0.68 +1.6
38,842 + 16295 mRNA_7927 0.68 +0.9
38,991 + 16295 mRNA_7927 0.85 -0.7
39,009 - 16295 mRNA_7927 0.87 -0.7
39,022 + 16295 mRNA_7927 0.89 -2.4
39,057 + +1.9
39,131 + -1.2
39,165 + +1.2
39,177 - +1.2
39,264 - +0.3
39,302 - +0.2
39,317 + +0.9
39,338 + +0.6
39,479 - -1.4
39,639 - 16296 mRNA_7928 0.20 +1.1
39,643 - 16296 mRNA_7928 0.20 -0.2
39,665 + 16296 mRNA_7928 0.22 -1.8
39,721 - 16296 mRNA_7928 0.27 -0.2
39,732 - 16296 mRNA_7928 0.28 -2.6
39,791 + 16296 mRNA_7928 0.33 -0.3
39,807 - 16296 mRNA_7928 0.34 +0.2
39,890 + 16296 mRNA_7928 0.41 +0.6
39,893 - 16296 mRNA_7928 0.42 -1.6
39,893 - 16296 mRNA_7928 0.42 -0.3
39,893 - 16296 mRNA_7928 0.42 -0.5
39,957 + 16296 mRNA_7928 0.47 -0.0
39,992 - 16296 mRNA_7928 0.50 -0.6
40,077 + 16296 mRNA_7928 0.57 +1.2

Or see this region's nucleotide sequence