Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7935

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16302 and 16303 are separated by 774 nucleotides16303 and 16304 are separated by 383 nucleotides mRNA_7934: 16302 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 49,885 to 50,735 16302 mRNA_7935: 16303 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 51,510 to 51,923 16303 mRNA_7936: 16304 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 52,307 to 53,072 16304

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
50,585 + 16302 mRNA_7934 0.82 +0.4
50,628 - 16302 mRNA_7934 0.87 -0.9
50,656 - +0.6
50,782 - +1.1
50,929 + -0.5
51,081 + +0.2
51,427 + +1.8
51,446 + -1.3
51,818 + 16303 mRNA_7935 0.74 -0.8
52,125 - +2.1
52,135 + +1.1
52,241 + -0.2
52,407 - 16304 mRNA_7936 0.13 -0.5
52,456 + 16304 mRNA_7936 0.19 +3.0
52,686 - 16304 mRNA_7936 0.49 +0.4
52,797 - 16304 mRNA_7936 0.64 +0.2
52,826 + 16304 mRNA_7936 0.68 -1.3

Or see this region's nucleotide sequence