Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7940

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16307 and 16308 are separated by 455 nucleotides16308 and 16309 are separated by 241 nucleotides16309 and 16310 are separated by 157 nucleotides mRNA_7939: 16307 - Hypothetical Protein, at 58,388 to 59,651 16307 mRNA_7940: 16308 - Hypothetical Protein, at 60,107 to 61,381 16308 mRNA_7941: 16309 - Hypothetical Protein, at 61,623 to 61,945 16309 mRNA_7942: 16310 - K12824 TCERG1, CA150 transcription elongation regulator 1, at 62,103 to 65,141 16310

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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59,191 + 16307 mRNA_7939 0.64 +0.7
59,406 + 16307 mRNA_7939 0.81 +0.5
59,460 - 16307 mRNA_7939 0.85 +0.4
59,467 + 16307 mRNA_7939 0.85 -0.4
59,929 + -0.7
59,960 + -1.4
60,005 - +0.8
60,028 - +1.6
60,241 - 16308 mRNA_7940 0.11 -0.6
60,586 - 16308 mRNA_7940 0.38 -0.4
60,746 - 16308 mRNA_7940 0.50 -0.5
60,849 + 16308 mRNA_7940 0.58 +0.5
60,865 + 16308 mRNA_7940 0.59 -0.3
61,125 + 16308 mRNA_7940 0.80 -0.8
61,208 + 16308 mRNA_7940 0.86 +1.6
61,311 - -1.4
61,317 + -0.2
61,512 + +1.4
61,796 + 16309 mRNA_7941 0.54 +0.6
61,806 - 16309 mRNA_7941 0.57 -0.0
61,807 + 16309 mRNA_7941 0.57 +0.7
61,924 + -0.8
62,085 - +1.1

Or see this region's nucleotide sequence