Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7950

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16317 and 16318 are separated by 506 nucleotides16318 and 16319 are separated by 550 nucleotides mRNA_7949: 16317 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 75,609 to 76,482 16317 mRNA_7950: 16318 - K04802 PCNA proliferating cell nuclear antigen, at 76,989 to 79,257 16318 mRNA_7951: 16319 - K09527 DNAJC7 DnaJ homolog subfamily C member 7, at 79,808 to 82,314 16319

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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76,096 - 16317 mRNA_7949 0.56 +0.3
76,104 + 16317 mRNA_7949 0.57 -2.7
76,182 + 16317 mRNA_7949 0.66 +0.4
76,241 - 16317 mRNA_7949 0.72 +1.0
76,265 - 16317 mRNA_7949 0.75 +0.0
76,280 - 16317 mRNA_7949 0.77 +1.9
76,590 - -0.4
76,622 - +1.1
76,812 - -0.6
76,915 - -0.9
77,990 + 16318 mRNA_7950 0.44 +0.5
79,287 + -1.0
79,343 - +1.6
79,343 - +0.7
79,348 + +0.6
79,394 - -0.1
79,400 + -0.0
79,405 - -0.8
79,409 + +0.3
79,494 + -0.3
79,679 + +0.0
79,798 + +0.8
79,925 - +2.1
79,931 + -0.5
80,080 + 16319 mRNA_7951 0.11 -0.9

Or see this region's nucleotide sequence