Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7952

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16319 and 16320 are separated by 251 nucleotides mRNA_7951: 16319 - K09527 DNAJC7 DnaJ homolog subfamily C member 7, at 79,808 to 82,314 16319 mRNA_7952: 16320 - KOG0627 Heat shock transcription factor, at 82,566 to 84,687 16320

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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81,693 + 16319 mRNA_7951 0.75 +0.5
81,831 + 16319 mRNA_7951 0.81 +2.6
82,009 + 16319 mRNA_7951 0.88 -0.3
82,091 + +1.0
82,124 + -0.5
82,124 + -1.4
82,228 + -0.8
82,317 - +1.5
82,547 + +1.2
82,592 - +0.2
82,721 - -0.8
83,236 - 16320 mRNA_7952 0.32 -0.6
83,237 + 16320 mRNA_7952 0.32 +0.7
83,416 + 16320 mRNA_7952 0.40 +0.7
83,582 + 16320 mRNA_7952 0.48 +1.7
83,583 + 16320 mRNA_7952 0.48 -2.9
83,596 + 16320 mRNA_7952 0.49 +0.4
83,713 - 16320 mRNA_7952 0.54 +0.4
83,836 + 16320 mRNA_7952 0.60 +0.5
83,892 + 16320 mRNA_7952 0.62 -2.0
84,150 - 16320 mRNA_7952 0.75 -2.5
84,151 + 16320 mRNA_7952 0.75 +0.4
84,324 - 16320 mRNA_7952 0.83 -0.0
84,449 + 16320 mRNA_7952 0.89 +0.2
84,595 + +0.9
84,860 - +0.9
85,155 - +0.3
85,172 + +0.2
85,284 + +0.2
85,297 + -0.2
85,466 + -2.8
85,614 - +0.6
85,619 - +0.9
85,627 + -0.4
85,652 + +1.8
85,656 + -0.1

Or see this region's nucleotide sequence