Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7969

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16336 and 16337 are separated by 455 nucleotides16337 and 16338 are separated by 269 nucleotides mRNA_7968: 16336 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 112,971 to 114,201 16336 mRNA_7969: 16337 - Hypothetical Protein, at 114,657 to 115,244 16337 mRNA_7970: 16338 - SUPERFAMILY--SSF144232, at 115,514 to 116,661 16338

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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113,690 - 16336 mRNA_7968 0.58 -1.8
113,792 - 16336 mRNA_7968 0.67 +0.8
113,860 - 16336 mRNA_7968 0.72 -0.1
113,919 + 16336 mRNA_7968 0.77 +0.2
113,979 + 16336 mRNA_7968 0.82 -0.5
113,981 - 16336 mRNA_7968 0.82 -1.1
113,983 + 16336 mRNA_7968 0.82 -0.2
113,983 - 16336 mRNA_7968 0.82 +3.1
113,998 + 16336 mRNA_7968 0.83 -0.2
114,069 - 16336 mRNA_7968 0.89 +0.9
114,162 - +0.4
114,185 - +0.1
114,185 - +1.2
114,188 - +0.2
114,257 + +0.9
114,260 + +1.2
114,323 - +2.0
114,377 + +0.5
114,384 - -0.0
114,530 + +1.3
114,531 + +1.1
114,647 + -0.1
114,651 - -1.4
114,724 - 16337 mRNA_7969 0.11 +1.6
114,731 + 16337 mRNA_7969 0.13 -0.8
114,760 - 16337 mRNA_7969 0.18 +1.4
114,840 - 16337 mRNA_7969 0.31 -2.6
114,980 - 16337 mRNA_7969 0.55 +0.6
114,998 - 16337 mRNA_7969 0.58 +0.4
115,000 - 16337 mRNA_7969 0.58 -1.4
115,078 - 16337 mRNA_7969 0.72 +0.7
115,087 - 16337 mRNA_7969 0.73 +0.2
115,087 + 16337 mRNA_7969 0.73 -0.1
115,090 - 16337 mRNA_7969 0.74 +1.2
115,093 - 16337 mRNA_7969 0.74 +0.1
115,182 + 16337 mRNA_7969 0.89 +1.8
115,234 + +0.0
115,284 - +0.5
115,306 + -0.2
115,309 - -0.2
115,534 + -2.0
115,698 + 16338 mRNA_7970 0.16 -1.5
115,717 - 16338 mRNA_7970 0.18 +0.9
115,819 - 16338 mRNA_7970 0.27 +0.6
115,839 + 16338 mRNA_7970 0.28 +2.6
115,966 - 16338 mRNA_7970 0.39 +0.8
116,048 + 16338 mRNA_7970 0.47 +0.0
116,051 - 16338 mRNA_7970 0.47 +0.4
116,114 + 16338 mRNA_7970 0.52 +0.7
116,117 + 16338 mRNA_7970 0.53 +0.8
116,135 - 16338 mRNA_7970 0.54 -0.1
116,170 + 16338 mRNA_7970 0.57 -0.3
116,185 - 16338 mRNA_7970 0.58 -1.4

Or see this region's nucleotide sequence