Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7973

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16340 and 16341 are separated by 560 nucleotides16341 and 16342 are separated by 262 nucleotides mRNA_7972: 16340 - Hypothetical Protein, at 120,428 to 122,131 16340 mRNA_7973: 16341 - KOG3511 Sortilin and related receptors, at 122,692 to 128,410 16341 mRNA_7974: 16342 - Hypothetical Protein, at 128,673 to 129,137 16342

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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121,948 - 16340 mRNA_7972 0.89 +0.6
121,949 - 16340 mRNA_7972 0.89 +0.5
122,110 - -2.0
122,152 + -0.7
122,172 - -0.9
122,408 + +2.4
122,503 - -0.7
122,524 - -0.8
122,702 + -0.8
122,714 - +1.0
123,107 - +1.1
123,383 - 16341 mRNA_7973 0.12 -1.1
123,406 - 16341 mRNA_7973 0.12 -0.6
123,427 - 16341 mRNA_7973 0.13 -1.3
123,427 + 16341 mRNA_7973 0.13 -0.9
123,607 + 16341 mRNA_7973 0.16 +1.4
123,771 + 16341 mRNA_7973 0.19 +2.5
123,974 - 16341 mRNA_7973 0.22 +0.5
123,999 + 16341 mRNA_7973 0.23 -1.2
124,077 + 16341 mRNA_7973 0.24 -0.6
124,294 - 16341 mRNA_7973 0.28 -1.3
124,411 - 16341 mRNA_7973 0.30 -1.8
124,690 - 16341 mRNA_7973 0.35 -3.9
124,744 - 16341 mRNA_7973 0.36 +0.8
124,774 + 16341 mRNA_7973 0.36 -2.9
124,878 + 16341 mRNA_7973 0.38 -0.9
124,962 + 16341 mRNA_7973 0.40 +0.4
125,189 - 16341 mRNA_7973 0.44 -1.4
125,217 + 16341 mRNA_7973 0.44 -0.0
125,415 - 16341 mRNA_7973 0.48 -2.2
125,425 + 16341 mRNA_7973 0.48 -0.3
125,425 - 16341 mRNA_7973 0.48 +2.8
125,943 - 16341 mRNA_7973 0.57 -0.2
126,330 + 16341 mRNA_7973 0.64 +0.1
126,371 - 16341 mRNA_7973 0.64 -1.3
127,016 - 16341 mRNA_7973 0.76 -0.8
127,157 - 16341 mRNA_7973 0.78 -0.1
128,185 - -2.1
128,281 - -0.7
128,321 + -2.0
128,321 + -1.6
128,574 - -2.3
128,574 + -0.8
128,575 + -0.8
128,575 + +0.2
128,575 + -0.3
128,581 + +0.2
128,587 - +1.7
128,598 + +0.4
128,598 - +0.5
128,603 + -0.3
128,603 + +0.8
128,609 + -2.4
128,609 + +0.5
128,614 + +0.1
128,714 + -1.5
128,722 - 16342 mRNA_7974 0.11 +2.6
128,872 - 16342 mRNA_7974 0.43 -0.4
128,877 + 16342 mRNA_7974 0.44 +0.4
128,897 - 16342 mRNA_7974 0.48 +1.0
129,203 + +0.1
129,230 - -1.5
129,307 - +0.5
129,309 + -0.2
129,309 + -1.9
129,312 - +1.1
129,320 - +0.4
129,338 + +2.0

Or see this region's nucleotide sequence