Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8011

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16378 and 16379 are separated by 384 nucleotides16379 and 16380 are separated by 304 nucleotides mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206,291 to 207,434 16378 mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207,819 to 208,967 16379 mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209,272 to 211,609 16380

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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207,025 + 16378 mRNA_8010 0.64 -1.1
207,296 - 16378 mRNA_8010 0.88 -1.3
207,492 - -0.7
207,505 + -1.0
207,506 + -0.3
207,645 - -1.2
207,651 + -2.1
208,100 - 16379 mRNA_8011 0.24 +2.2
208,904 - -1.1
208,955 + -2.8
208,958 - +1.2
208,965 - +1.9
208,969 - -2.0
209,011 - -0.6
209,162 + -1.0
209,168 + +0.5
209,438 + +0.3
209,588 + 16380 mRNA_8012 0.14 +0.2
209,596 + 16380 mRNA_8012 0.14 -1.5
209,856 + 16380 mRNA_8012 0.25 +3.1

Or see this region's nucleotide sequence