Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8018

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16385 and 16386 are separated by 911 nucleotides mRNA_8017: 16385 - K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1, at 218,888 to 219,506 16385 mRNA_8018: 16386 - Hypothetical Protein, at 220,418 to 221,008 16386

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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220,018 - -0.6
220,029 - -1.1
220,032 - +0.2
220,035 - +1.2
220,043 + -0.1
220,045 + +0.0
220,060 + -0.4
220,638 + 16386 mRNA_8018 0.37 -0.0
220,725 - 16386 mRNA_8018 0.52 +1.3
220,870 + 16386 mRNA_8018 0.76 -0.4
220,912 - 16386 mRNA_8018 0.84 +0.8
221,023 + +0.7
221,023 + +0.1
221,165 + -0.4
221,321 + +0.1
221,330 - +0.3
221,587 - -2.2
221,717 - -0.1
221,785 - -0.9

Or see this region's nucleotide sequence