Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8031

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16398 and 16399 are separated by 283 nucleotides16399 and 16400 are separated by 592 nucleotides mRNA_8030: 16398 - KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains, at 250,044 to 251,923 16398 mRNA_8031: 16399 - K14325 RNPS1 RNA-binding protein with serine-rich domain 1, at 252,207 to 252,830 16399 mRNA_8032: 16400 - K14007 SEC24 protein transport protein SEC24, at 253,423 to 257,120 16400

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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251,219 - 16398 mRNA_8030 0.62 -1.0
251,252 - 16398 mRNA_8030 0.64 +0.4
251,413 + 16398 mRNA_8030 0.73 -0.7
251,628 - 16398 mRNA_8030 0.84 +1.5
251,672 - 16398 mRNA_8030 0.87 +1.2
251,822 - +1.8
251,830 - +0.2
251,857 - +0.1
251,941 - +2.2
251,955 - -0.7
251,956 - +0.8
251,964 - +0.2
251,966 + +0.1
251,968 + -0.7
251,980 + +0.1
252,280 + 16399 mRNA_8031 0.12 +0.1
252,280 + 16399 mRNA_8031 0.12 +0.7
252,414 + 16399 mRNA_8031 0.33 +1.2
252,601 - 16399 mRNA_8031 0.63 +0.4
252,854 + +0.5
252,864 + -0.8
253,030 + +0.9
253,146 - -2.0
253,148 - -0.3
253,295 + -0.2
253,307 - -1.3
253,313 + +0.2
253,473 + +0.8

Or see this region's nucleotide sequence