Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8053

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16420 and 16421 are separated by 112 nucleotides16421 and 16422 are separated by 163 nucleotides mRNA_8052: 16420 - KOG2372 Oxidation resistance protein, at 307,058 to 308,931 16420 mRNA_8053: 16421 - K03037 PSMD6, RPN7 26S proteasome regulatory subunit N7, at 309,044 to 310,701 16421 mRNA_8054: 16422 - K03036 PSMD11, RPN6 26S proteasome regulatory subunit N6, at 310,865 to 312,762 16422

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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308,280 + 16420 mRNA_8052 0.65 +0.0
308,357 + 16420 mRNA_8052 0.69 +1.7
308,475 + 16420 mRNA_8052 0.76 -0.3
308,751 - -0.0
308,758 - -0.4
308,764 - +0.5
308,924 + -0.6
308,930 + -0.8
310,812 + -0.7

Or see this region's nucleotide sequence