Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8089

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16456 and 16457 are separated by 317 nucleotides16457 and 16458 are separated by 167 nucleotides mRNA_8088: 16456 - Hypothetical Protein, at 392,767 to 393,298 16456 mRNA_8089: 16457 - Hypothetical Protein, at 393,616 to 394,916 16457 mRNA_8090: 16458 - K12737 SDCCAG10 peptidyl-prolyl cis-trans isomerase SDCCAG10, at 395,084 to 397,372 16458

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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393,678 - -1.5
394,405 - 16457 mRNA_8089 0.61 +0.8
394,408 - 16457 mRNA_8089 0.61 -1.6
394,697 + 16457 mRNA_8089 0.83 +0.3
394,745 - 16457 mRNA_8089 0.87 -1.2
394,833 + +0.6
394,969 - +0.8
394,970 - +0.3
394,976 - -0.2
395,114 + +0.1
395,162 + -1.9
395,406 - 16458 mRNA_8090 0.14 +0.1
395,566 - 16458 mRNA_8090 0.21 +0.9
395,834 + 16458 mRNA_8090 0.33 +1.1
395,861 - 16458 mRNA_8090 0.34 +0.2

Or see this region's nucleotide sequence