Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8139

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16507 and 16508 are separated by 174 nucleotides mRNA_8139: 16507 - K01139 spoT, HDDC3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 509,423 to 510,293 16507 mRNA_8140: 16508 - Hypothetical Protein, at 510,468 to 511,367 16508

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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508,507 + +0.6
508,640 - -0.5
508,659 + -0.8
508,673 - -2.5
508,683 - -1.2
508,686 + -0.2
508,822 + +0.4
508,966 - -0.0
509,127 + -0.4
509,256 + -0.0
509,380 - -0.3
509,403 - -1.0
509,442 - -2.5
509,556 + 16507 mRNA_8139 0.15 -0.7
509,841 - 16507 mRNA_8139 0.48 -1.1
510,001 + 16507 mRNA_8139 0.66 -0.1
510,040 + 16507 mRNA_8139 0.71 +0.9
510,423 + +0.4
510,735 - 16508 mRNA_8140 0.30 -0.9
510,757 + 16508 mRNA_8140 0.32 -0.5
510,985 + 16508 mRNA_8140 0.57 -2.4
511,114 - 16508 mRNA_8140 0.72 -2.1
511,183 + 16508 mRNA_8140 0.79 -0.7

Or see this region's nucleotide sequence