Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8196

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16563 and 16564 are separated by 110 nucleotides mRNA_8195: 16563 - Hypothetical Protein, at 645,580 to 648,404 16563 mRNA_8196: 16564 - K13501 TRP1 anthranilate synthase / indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase, at 648,515 to 650,860 16564

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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647,543 - 16563 mRNA_8195 0.69 +1.6
648,230 - -1.6
651,040 - +0.5
651,355 - +0.2
651,363 - +2.3
651,367 + -0.7
651,378 - +0.2
651,390 + +1.5
651,517 + -0.9
651,532 - +0.9

Or see this region's nucleotide sequence