Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8202

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16569 and 16570 are separated by 321 nucleotides16570 and 16571 are separated by 441 nucleotides mRNA_8201: 16569 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 660,279 to 661,499 16569 mRNA_8202: 16570 - K03283 HSPA1_8 heat shock 70kDa protein 1/8, at 661,821 to 664,157 16570 mRNA_8203: 16571 - KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene, at 664,599 to 665,368 16571

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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661,257 + 16569 mRNA_8201 0.80 -0.3
661,351 + 16569 mRNA_8201 0.88 -0.3
661,354 - 16569 mRNA_8201 0.88 -1.7
661,375 - 16569 mRNA_8201 0.90 -0.2
661,515 - +0.6
661,530 - -1.3
661,665 + +0.3
661,666 - +0.9
661,668 + -1.7
661,672 - -0.2
661,681 - +0.2
661,682 - -2.3
661,683 + -0.7
661,688 + +0.9
661,688 - -1.5
661,692 - -0.4
664,551 + -1.7
664,831 - 16571 mRNA_8203 0.30 +0.1
664,846 - 16571 mRNA_8203 0.32 -0.5
664,850 - 16571 mRNA_8203 0.33 +0.4

Or see this region's nucleotide sequence