Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8207

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16574 and 16575 are separated by 141 nucleotides16575 and 16576 are separated by 184 nucleotides mRNA_8206: 16574 - Hypothetical Protein, at 668,927 to 671,971 16574 mRNA_8207: 16575 - K09578 PIN1 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, at 672,113 to 672,814 16575 mRNA_8208: 16576 - BLAST putative Rho guanyl-nucleotide exchange factor [Rhodo..., at 672,999 to 674,159 16576

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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671,177 + 16574 mRNA_8206 0.74 -1.0
671,347 - 16574 mRNA_8206 0.79 -1.1
671,608 - 16574 mRNA_8206 0.88 +1.4
671,919 + -2.0
672,042 + +1.1
672,056 - +0.8
672,202 - 16575 mRNA_8207 0.13 +1.1
672,216 + 16575 mRNA_8207 0.15 -1.2
672,322 + 16575 mRNA_8207 0.30 +0.3
672,341 - 16575 mRNA_8207 0.32 -0.4
672,374 + 16575 mRNA_8207 0.37 +0.5
672,682 + 16575 mRNA_8207 0.81 +0.3
673,650 - 16576 mRNA_8208 0.56 +0.4
673,796 + 16576 mRNA_8208 0.69 +0.8

Or see this region's nucleotide sequence