Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8227

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16594 and 16595 are separated by 313 nucleotides16595 and 16596 are separated by 2 nucleotides mRNA_8226: 16594 - KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains, at 713,959 to 715,025 16594 mRNA_8227: 16595 - BLAST Post-SET domain protein [Cordyceps confragosa RCEF 1005], at 715,339 to 716,197 16595 mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716,200 to 719,512 16596

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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714,386 + 16594 mRNA_8226 0.40 +2.1
714,678 + 16594 mRNA_8226 0.67 -0.4
714,825 + 16594 mRNA_8226 0.81 +0.3
714,937 + -1.1
715,069 + +0.5
715,116 - -2.2
715,125 - +0.5
715,132 - +0.2
715,270 - +0.8
715,272 + +0.6
715,275 - -0.2
715,276 - +0.5
715,277 + -1.1
715,283 + +0.3
715,359 + +0.7
715,376 + -0.7
715,382 - +1.8
715,384 + -1.3
715,390 - -0.1
715,397 - +0.5
715,397 + +0.3
715,399 + +0.4
715,400 + +1.9
715,406 - +0.5
715,409 + +0.2
715,409 + -0.5
715,427 + 16595 mRNA_8227 0.10 +0.3
715,428 + 16595 mRNA_8227 0.10 +0.0
715,438 - 16595 mRNA_8227 0.12 -0.3
715,514 - 16595 mRNA_8227 0.20 +1.3
715,532 - 16595 mRNA_8227 0.22 -0.2
715,552 + 16595 mRNA_8227 0.25 -1.5
715,565 + 16595 mRNA_8227 0.26 +2.6
715,569 - 16595 mRNA_8227 0.27 -0.6
715,574 + 16595 mRNA_8227 0.27 -0.0
715,578 - 16595 mRNA_8227 0.28 -1.3
715,580 - 16595 mRNA_8227 0.28 -1.2
715,584 - 16595 mRNA_8227 0.29 -1.4
715,589 + 16595 mRNA_8227 0.29 +0.4
715,602 - 16595 mRNA_8227 0.31 -0.0
715,605 + 16595 mRNA_8227 0.31 +0.3
715,609 - 16595 mRNA_8227 0.31 +0.6
715,609 + 16595 mRNA_8227 0.31 -1.2
715,609 + 16595 mRNA_8227 0.31 +0.7
715,611 + 16595 mRNA_8227 0.32 +1.1
715,614 - 16595 mRNA_8227 0.32 -1.2
715,615 + 16595 mRNA_8227 0.32 +1.7
715,615 + 16595 mRNA_8227 0.32 -0.3
715,617 + 16595 mRNA_8227 0.32 -0.2
715,619 + 16595 mRNA_8227 0.33 +0.6
715,621 + 16595 mRNA_8227 0.33 +0.2
715,621 + 16595 mRNA_8227 0.33 -1.3
715,621 + 16595 mRNA_8227 0.33 -1.0
715,622 - 16595 mRNA_8227 0.33 +1.2
715,624 + 16595 mRNA_8227 0.33 -0.7
715,634 + 16595 mRNA_8227 0.34 -1.5
715,696 + 16595 mRNA_8227 0.42 -1.2
715,699 - 16595 mRNA_8227 0.42 -0.1
715,700 + 16595 mRNA_8227 0.42 +1.0
715,701 + 16595 mRNA_8227 0.42 +0.0
715,707 + 16595 mRNA_8227 0.43 -0.3
715,708 + 16595 mRNA_8227 0.43 +0.1
715,709 + 16595 mRNA_8227 0.43 +2.2
715,710 - 16595 mRNA_8227 0.43 +0.7
715,713 - 16595 mRNA_8227 0.44 -0.6
715,725 - 16595 mRNA_8227 0.45 +1.6
715,727 + 16595 mRNA_8227 0.45 +1.2
715,730 + 16595 mRNA_8227 0.46 +1.5
715,736 + 16595 mRNA_8227 0.46 +1.0
715,791 + 16595 mRNA_8227 0.53 +0.2
715,981 - 16595 mRNA_8227 0.75 -2.2
716,747 - 16596 mRNA_8228 0.17 +1.3
716,750 - 16596 mRNA_8228 0.17 -0.9
717,185 + 16596 mRNA_8228 0.30 -0.3

Or see this region's nucleotide sequence