Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8249

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16616 and 16617 are separated by 457 nucleotides16617 and 16618 are separated by 127 nucleotides mRNA_8248: 16616 - KOG2945 Predicted RNA-binding protein, at 760,832 to 762,310 16616 mRNA_8249: 16617 - SUPERFAMILY--SSF52047, at 762,768 to 764,331 16617 mRNA_8250: 16618 - K17069 MET17 O-acetylhomoserine/O-acetylserine sulfhydrylase, at 764,459 to 766,227 16618

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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761,847 + 16616 mRNA_8248 0.69 +1.2
762,562 - -0.3
762,850 + +2.1
762,873 + +0.9
762,994 - 16617 mRNA_8249 0.14 -1.1
763,028 + 16617 mRNA_8249 0.17 +0.2
763,047 - 16617 mRNA_8249 0.18 +1.0
763,440 - 16617 mRNA_8249 0.43 +0.4
763,444 - 16617 mRNA_8249 0.43 -0.8
763,758 - 16617 mRNA_8249 0.63 -0.3
763,774 + 16617 mRNA_8249 0.64 +0.2
764,149 - 16617 mRNA_8249 0.88 +0.0
764,311 - +0.2
764,316 + -0.5
764,324 + +0.1
764,475 - +0.5
764,605 - -0.6
764,708 - 16618 mRNA_8250 0.14 -2.1
764,711 - 16618 mRNA_8250 0.14 +1.8
764,880 - 16618 mRNA_8250 0.24 -0.8
764,894 + 16618 mRNA_8250 0.25 -1.5
764,911 + 16618 mRNA_8250 0.26 +0.1
764,915 - 16618 mRNA_8250 0.26 -0.3

Or see this region's nucleotide sequence