Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8260

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16627 and 16628 are separated by 361 nucleotides16628 and 16629 are separated by 399 nucleotides mRNA_8259: 16627 - HMMPfam-DENN (AEX-3) domain-PF02141,ProSiteProfiles-DENN domain profile.-PS50211,SMART-Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN-SM00799, at 784,398 to 789,104 16627 mRNA_8260: 16628 - KOG2354 RNA Polymerase C (III) 37 kDa subunit, at 789,466 to 790,634 16628 mRNA_8261: 16629 - KOG0714 Molecular chaperone (DnaJ superfamily), at 791,034 to 792,171 16629

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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789,040 - +0.6
789,241 + +0.5
790,707 + -1.7
790,939 - -0.6
790,941 - -0.6
790,953 - +1.9
790,956 - +0.8
790,960 + -0.7
790,962 + -0.1
790,980 - -1.1
790,992 - +2.0
791,097 + +0.3
791,100 - +0.2
791,109 + +0.3
791,123 + -0.2
791,174 - 16629 mRNA_8261 0.12 +0.0
791,203 + 16629 mRNA_8261 0.15 -0.1
791,391 + 16629 mRNA_8261 0.31 -0.1
791,441 + 16629 mRNA_8261 0.36 -0.6

Or see this region's nucleotide sequence