Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8289

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16657 and 16658 are separated by 278 nucleotides mRNA_8289: 16657 - KOG1601 GATA-4/5/6 transcription factors, at 856,071 to 857,914 16657 mRNA_8290: 16658 - K02327 POLD1 DNA polymerase delta subunit 1, at 858,193 to 863,054 16658

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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855,355 - +1.1
855,436 + +1.4
855,930 - +2.2
856,120 - +1.1
856,125 + +2.0
856,125 + +2.9
856,261 + 16657 mRNA_8289 0.10 -0.2
856,262 - 16657 mRNA_8289 0.10 +2.0
856,273 + 16657 mRNA_8289 0.11 -0.7
856,293 + 16657 mRNA_8289 0.12 +1.2
856,446 - 16657 mRNA_8289 0.20 +2.0
856,469 - 16657 mRNA_8289 0.22 +1.6
856,472 - 16657 mRNA_8289 0.22 +1.1
856,492 + 16657 mRNA_8289 0.23 +0.8
856,494 + 16657 mRNA_8289 0.23 +3.3
856,525 + 16657 mRNA_8289 0.25 +2.7
856,781 - 16657 mRNA_8289 0.39 +1.0
856,783 + 16657 mRNA_8289 0.39 +2.4
856,910 + 16657 mRNA_8289 0.45 +0.1
857,925 + +1.2

Or see this region's nucleotide sequence