Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8292

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16659 and 16660 are separated by 475 nucleotides16660 and 16661 are separated by 275 nucleotides mRNA_8291: 16659 - K00851 E2.7.1.12, gntK, idnK gluconokinase, at 863,269 to 864,250 16659 mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864,726 to 865,561 16660 mRNA_8293: 16661 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339, at 865,837 to 868,084 16661

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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863,854 + 16659 mRNA_8291 0.60 +2.5
864,104 - 16659 mRNA_8291 0.85 +0.6
864,117 + 16659 mRNA_8291 0.86 -1.2
864,232 + +0.3
864,236 + -2.9
864,377 - -0.2
864,398 - +0.4
864,410 - -0.5
864,413 + +0.4
864,535 + +1.0
864,555 + +0.7
864,612 + -1.2
864,660 - -1.2
864,715 - +0.6
864,831 + 16660 mRNA_8292 0.13 +0.7
864,864 + 16660 mRNA_8292 0.17 +0.2
864,867 - 16660 mRNA_8292 0.17 -1.0
864,870 - 16660 mRNA_8292 0.17 +0.8
864,876 - 16660 mRNA_8292 0.18 +0.0
864,898 + 16660 mRNA_8292 0.21 -0.1
864,981 + 16660 mRNA_8292 0.31 +0.1
865,030 + 16660 mRNA_8292 0.36 -0.2
865,094 + 16660 mRNA_8292 0.44 +1.0
865,297 + 16660 mRNA_8292 0.68 -2.8
865,338 + 16660 mRNA_8292 0.73 +1.1
865,417 + 16660 mRNA_8292 0.83 +0.9
865,727 - -1.0
865,881 + +0.4
865,904 + +0.3
866,010 - +1.7
866,010 - -0.3

Or see this region's nucleotide sequence