Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8297

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16665 and 16666 are separated by 313 nucleotides mRNA_8297: 16665 - Hypothetical Protein, at 877,127 to 877,627 16665 mRNA_8298: 16666 - K02858 ribB, RIB3 3,4-dihydroxy 2-butanone 4-phosphate synthase, at 877,941 to 878,924 16666

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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876,284 - +2.5
876,302 + +2.4
876,603 + +1.3
876,626 + -0.3
877,313 - 16665 mRNA_8297 0.37 -0.5
877,366 + 16665 mRNA_8297 0.48 +1.9
877,464 - 16665 mRNA_8297 0.67 -0.1
877,732 - +0.2
877,739 - -0.1
877,785 + +1.8
877,798 + +1.3

Or see this region's nucleotide sequence