Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8306

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16673 and 16674 are separated by 414 nucleotides16674 and 16675 are separated by 390 nucleotides mRNA_8305: 16673 - Hypothetical Protein, at 895,280 to 896,635 16673 mRNA_8306: 16674 - Hypothetical Protein, at 897,050 to 897,488 16674 mRNA_8307: 16675 - Hypothetical Protein, at 897,879 to 899,223 16675

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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896,109 - 16673 mRNA_8305 0.61 +1.1
896,380 - 16673 mRNA_8305 0.81 -1.7
896,543 + +2.6
896,667 - -0.5
896,723 + +0.4
896,814 - -0.5
896,844 + +0.7
897,122 + 16674 mRNA_8306 0.16 -0.5
897,261 - 16674 mRNA_8306 0.48 -0.1
897,265 - 16674 mRNA_8306 0.49 +0.6
897,266 + 16674 mRNA_8306 0.49 +0.2
897,283 + 16674 mRNA_8306 0.53 -1.3
897,416 + 16674 mRNA_8306 0.83 +0.1
897,435 + 16674 mRNA_8306 0.88 -1.4
898,296 + 16675 mRNA_8307 0.31 -2.1
898,309 + 16675 mRNA_8307 0.32 +1.3

Or see this region's nucleotide sequence