Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8350

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16718 and 16719 are separated by 117 nucleotides mRNA_8350: 16718 - K11397 EAF1, VID21 chromatin modification-related protein VID21, at 1,003,581 to 1,006,700 16718 mRNA_8351: 16719 - K14303 NUP160, NUP120 nuclear pore complex protein Nup160, at 1,006,818 to 1,012,012 16719

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,002,585 + -1.6
1,002,634 + +0.8
1,002,648 + +0.0
1,002,746 + -0.6
1,002,878 - -0.8
1,002,921 - +0.1
1,002,935 + -0.0
1,002,935 + +0.8
1,002,950 - +0.5
1,003,027 - +0.8
1,003,040 - -0.1
1,003,053 + -1.5
1,003,064 + -1.1
1,003,083 - +0.4
1,003,086 - -0.5
1,003,187 - +0.9
1,003,213 - -1.2
1,003,226 + -0.0
1,005,949 + 16718 mRNA_8350 0.76 +0.3
1,006,501 - -0.3
1,006,963 - -1.1
1,007,264 - +0.2

Or see this region's nucleotide sequence