Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8354

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16721 and 16722 are separated by 69 nucleotides16722 and 16723 are separated by 527 nucleotides mRNA_8353: 16721 - BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos], at 1,014,385 to 1,015,330 16721 mRNA_8354: 16722 - K07734 paiB transcriptional regulator, at 1,015,400 to 1,016,161 16722 mRNA_8355: 16723 - KOG2111 Uncharacterized conserved protein, contains WD40 repeats, at 1,016,689 to 1,018,583 16723

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,014,837 + 16721 mRNA_8353 0.48 -1.8
1,014,887 - 16721 mRNA_8353 0.53 +0.9
1,014,975 - 16721 mRNA_8353 0.62 -0.2
1,015,090 - 16721 mRNA_8353 0.75 +0.1
1,015,397 - -0.5
1,015,428 - +1.6
1,015,755 + 16722 mRNA_8354 0.47 +1.3
1,015,919 + 16722 mRNA_8354 0.68 +0.6
1,016,043 + 16722 mRNA_8354 0.84 +1.1
1,016,060 + 16722 mRNA_8354 0.87 +0.1
1,016,176 - +1.8
1,016,195 - -1.3
1,016,283 - +0.3
1,016,357 - -0.2
1,016,416 - -1.0
1,016,467 - -0.5
1,016,538 + -0.5
1,016,592 - +0.6
1,016,600 + +0.6
1,016,639 - -0.9
1,016,754 - -1.7
1,017,105 + 16723 mRNA_8355 0.22 +1.6
1,017,109 + 16723 mRNA_8355 0.22 -1.0

Or see this region's nucleotide sequence