Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8430

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16797 and 16798 are separated by 529 nucleotides16798 and 16799 are separated by 235 nucleotides mRNA_8429: 16797 - Hypothetical Protein, at 1,207,475 to 1,209,032 16797 mRNA_8430: 16798 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,209,562 to 1,211,995 16798 mRNA_8431: 16799 - K15105 SLC25A12_13, AGC solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13, at 1,212,231 to 1,215,205 16799

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,208,581 - 16797 mRNA_8429 0.71 +0.4
1,208,738 - 16797 mRNA_8429 0.81 -0.4
1,208,919 - +0.2
1,208,923 - +0.4
1,209,024 - -1.1
1,209,169 - -0.6
1,209,170 + +0.2
1,209,238 + +0.9
1,209,341 - +0.6
1,209,419 + +0.2
1,209,451 - -1.1
1,209,460 + +0.3
1,209,476 + -1.1
1,210,049 + 16798 mRNA_8430 0.20 -2.2
1,210,069 - 16798 mRNA_8430 0.21 -0.6
1,210,116 - 16798 mRNA_8430 0.23 -0.8
1,210,119 + 16798 mRNA_8430 0.23 -0.2
1,210,134 - 16798 mRNA_8430 0.24 -0.7
1,210,167 + 16798 mRNA_8430 0.25 +0.5
1,210,198 - 16798 mRNA_8430 0.26 -1.0
1,210,628 + 16798 mRNA_8430 0.44 -0.8
1,210,634 + 16798 mRNA_8430 0.44 -0.8
1,210,660 - 16798 mRNA_8430 0.45 +1.0
1,210,825 + 16798 mRNA_8430 0.52 +0.0
1,210,934 - 16798 mRNA_8430 0.56 -1.1
1,210,934 - 16798 mRNA_8430 0.56 -1.8
1,210,940 + 16798 mRNA_8430 0.57 +2.6
1,210,940 + 16798 mRNA_8430 0.57 +1.7
1,210,961 + 16798 mRNA_8430 0.57 +0.4
1,211,206 - 16798 mRNA_8430 0.68 +1.0
1,211,237 - 16798 mRNA_8430 0.69 -1.2
1,211,263 - 16798 mRNA_8430 0.70 -0.3
1,211,271 + 16798 mRNA_8430 0.70 +0.6
1,211,376 + 16798 mRNA_8430 0.75 -0.3
1,211,419 + 16798 mRNA_8430 0.76 -0.4
1,211,521 + 16798 mRNA_8430 0.80 -0.6
1,211,546 + 16798 mRNA_8430 0.82 -0.3
1,211,619 - 16798 mRNA_8430 0.85 -0.5
1,211,675 - 16798 mRNA_8430 0.87 -1.1
1,211,932 - +2.3
1,211,951 - +1.6
1,212,070 + -0.1
1,212,106 + -0.4
1,212,130 - +1.1
1,212,146 + +1.0
1,212,188 - +0.5
1,212,264 - -0.6
1,212,264 - +0.8
1,212,558 - 16799 mRNA_8431 0.11 +0.2
1,212,687 - 16799 mRNA_8431 0.15 -2.7
1,212,691 + 16799 mRNA_8431 0.15 +0.8

Or see this region's nucleotide sequence