Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_16

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8383 and 8384 are separated by 242 nucleotides mRNA_15: 8383 - K02321 POLA2 DNA polymerase alpha subunit B, at 39,313 to 41,292 8383 mRNA_16: 8384 - K03407 cheA two-component system, chemotaxis family, sensor kinase CheA, at 41,535 to 45,882 8384

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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41,523 - +0.3
41,618 - -0.2
41,620 + -0.6
41,697 - -0.3
41,830 + +0.1
41,854 - -1.0
41,863 + -3.4
42,189 + 8384 mRNA_16 0.15 +0.9
42,340 - 8384 mRNA_16 0.19 +1.7
42,375 - 8384 mRNA_16 0.19 +0.2
42,431 + 8384 mRNA_16 0.21 +0.2
42,449 + 8384 mRNA_16 0.21 -0.2
42,479 + 8384 mRNA_16 0.22 +0.1
42,598 - 8384 mRNA_16 0.24 -0.1
42,602 - 8384 mRNA_16 0.25 -1.2
42,604 - 8384 mRNA_16 0.25 +0.3
42,613 - 8384 mRNA_16 0.25 +0.3
42,660 + 8384 mRNA_16 0.26 -1.5
42,785 + 8384 mRNA_16 0.29 +0.4
42,829 + 8384 mRNA_16 0.30 +1.0
42,912 + 8384 mRNA_16 0.32 +0.1
42,916 - 8384 mRNA_16 0.32 -0.2
43,043 + 8384 mRNA_16 0.35 +0.9
43,046 - 8384 mRNA_16 0.35 -0.0
43,055 + 8384 mRNA_16 0.35 -1.7
43,082 + 8384 mRNA_16 0.36 -0.4
43,091 + 8384 mRNA_16 0.36 +0.4
43,459 - 8384 mRNA_16 0.44 -0.3
43,464 - 8384 mRNA_16 0.44 -0.2
43,776 - 8384 mRNA_16 0.52 -0.4
43,803 - 8384 mRNA_16 0.52 -1.6
43,804 + 8384 mRNA_16 0.52 +0.0
43,804 - 8384 mRNA_16 0.52 +1.7
43,815 + 8384 mRNA_16 0.52 -0.7
43,816 + 8384 mRNA_16 0.52 +2.1
43,816 + 8384 mRNA_16 0.52 +2.8
43,882 + 8384 mRNA_16 0.54 +1.4
43,929 + 8384 mRNA_16 0.55 +0.1
43,929 + 8384 mRNA_16 0.55 +0.2
43,937 + 8384 mRNA_16 0.55 +1.1
43,954 - 8384 mRNA_16 0.56 -2.0
43,960 + 8384 mRNA_16 0.56 +1.0
43,962 + 8384 mRNA_16 0.56 -0.6
43,963 + 8384 mRNA_16 0.56 +1.1
43,986 + 8384 mRNA_16 0.56 -2.5
44,066 - 8384 mRNA_16 0.58 +0.3
44,142 - 8384 mRNA_16 0.60 -0.0
44,197 + 8384 mRNA_16 0.61 -0.1
44,332 - 8384 mRNA_16 0.64 +0.8
44,390 - 8384 mRNA_16 0.66 +2.5
44,476 - 8384 mRNA_16 0.68 -0.2
44,522 + 8384 mRNA_16 0.69 -1.7
44,543 + 8384 mRNA_16 0.69 +2.8
44,633 + 8384 mRNA_16 0.71 -0.6
44,699 - 8384 mRNA_16 0.73 -0.9
44,712 + 8384 mRNA_16 0.73 +0.3
44,812 - 8384 mRNA_16 0.75 -0.5
44,826 - 8384 mRNA_16 0.76 -0.1
44,979 + 8384 mRNA_16 0.79 -0.7
44,979 + 8384 mRNA_16 0.79 +0.0
45,062 - 8384 mRNA_16 0.81 +0.1
45,113 + 8384 mRNA_16 0.82 +2.1
45,142 - 8384 mRNA_16 0.83 -0.0
45,678 + +0.7
45,713 + +0.2
45,813 + +1.1
45,822 - +0.5
45,833 - -1.4
45,845 - +0.4
45,967 - -3.0
45,981 + -1.1
45,990 - +0.7
45,992 + -0.2
45,994 - -0.3
45,995 + -2.6
45,999 + +0.1
46,003 + +2.0
46,023 + +0.2
46,027 + +1.4
46,040 + -1.9
46,040 + -0.6
46,054 - +0.2
46,101 - +0.3
46,213 - +0.3
46,221 - +0.5
46,254 + -1.0
46,266 + -0.2
46,352 + -0.3
46,354 + +0.7
46,357 + -1.3
46,384 + -1.6
46,416 + +1.8
46,425 - -0.3
46,482 - +0.3
46,527 - -1.7
46,645 - -1.5
46,812 - -1.5
46,851 + -0.1

Or see this region's nucleotide sequence