Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_60

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8427 and 8428 are separated by 306 nucleotides8428 and 8429 are separated by 609 nucleotides mRNA_59: 8427 - Hypothetical Protein, at 141,223 to 142,116 8427 mRNA_60: 8428 - Hypothetical Protein, at 142,423 to 142,761 8428 mRNA_61: 8429 - SUPERFAMILY--SSF52047, at 143,371 to 144,965 8429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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141,449 - 8427 mRNA_59 0.25 -3.3
141,460 - 8427 mRNA_59 0.27 +1.6
141,509 - 8427 mRNA_59 0.32 -1.1
141,518 - 8427 mRNA_59 0.33 +0.2
141,747 + 8427 mRNA_59 0.59 +0.7
141,774 + 8427 mRNA_59 0.62 -1.0
141,788 - 8427 mRNA_59 0.63 -0.8
141,818 - 8427 mRNA_59 0.67 +2.6
141,824 - 8427 mRNA_59 0.67 -1.4
141,907 - 8427 mRNA_59 0.77 -0.7
142,085 + -1.6
142,688 - 8428 mRNA_60 0.78 +0.6
142,706 + 8428 mRNA_60 0.83 -2.4
143,007 + +0.1
143,119 + -1.4
143,119 - -0.7
143,397 - -0.4
143,399 - -1.4
143,401 + +1.1
143,408 - -0.8
143,426 + -0.1
143,559 + 8429 mRNA_61 0.12 +0.5

Or see this region's nucleotide sequence