Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_115

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8482 and 8483 are separated by 328 nucleotides8483 and 8484 are separated by 305 nucleotides mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267,754 to 270,066 8482 mRNA_115: 8483 - K14950 ATP13A1 cation-transporting ATPase 13A1, at 270,395 to 274,744 8483 mRNA_116: 8484 - K06072 DOHH deoxyhypusine monooxygenase, at 275,050 to 276,428 8484

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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269,395 + 8482 mRNA_114 0.71 -0.0
269,467 + 8482 mRNA_114 0.74 -1.3
269,797 - 8482 mRNA_114 0.88 -0.2
269,885 - -0.4
269,917 - -0.4
270,081 - -0.4
270,083 - +0.5
270,230 + +0.3
270,245 + +0.2
270,248 + +0.0
270,256 + -0.9
274,657 + +1.0
274,803 + -0.7
274,820 + -1.9
274,822 + +0.1
274,824 - +0.1
274,833 - +0.7
274,839 + +0.8
274,847 - -0.2
274,847 - -0.2
274,848 - -2.3
274,873 + +0.2
274,960 - -1.2
275,004 - -0.7

Or see this region's nucleotide sequence