Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_126

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8493 and 8494 are separated by 203 nucleotides mRNA_125: 8493 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 299,830 to 300,571 8493 mRNA_126: 8494 - Hypothetical Protein, at 300,775 to 301,342 8494

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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300,229 + 8493 mRNA_125 0.54 -1.0
300,694 + -0.6
300,820 + +0.5
300,824 - -0.4
301,109 - 8494 mRNA_126 0.59 +1.1
301,131 + 8494 mRNA_126 0.63 -0.1
301,131 + 8494 mRNA_126 0.63 -2.6
301,232 - 8494 mRNA_126 0.80 -0.3
301,245 - 8494 mRNA_126 0.83 -1.1
301,246 + 8494 mRNA_126 0.83 -1.3
301,265 + 8494 mRNA_126 0.86 +0.1
301,279 + 8494 mRNA_126 0.89 -0.2
301,304 + -1.3
301,313 + +0.1
301,350 + -0.4
301,542 + -1.2
301,550 + -0.0
301,554 + +1.0
301,564 + +0.2
301,665 + +0.3
301,670 + +0.2
301,676 - -1.2
301,694 + -0.4
301,695 - +0.2
301,702 - -0.3
301,720 - +0.3
301,728 + +1.3
301,733 - +0.4
301,737 + +1.0
301,740 + +0.1
301,741 - -0.9
301,754 + +1.1
301,756 - +0.4
301,760 + -0.7
301,824 - +1.1
301,851 + -0.9
301,877 + +0.5
301,926 + -0.4
302,214 + -0.9

Or see this region's nucleotide sequence