Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_132

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8499 and 8500 are separated by 287 nucleotides8500 and 8501 are separated by 418 nucleotides mRNA_131: 8499 - K11092 SNRPA1 U2 small nuclear ribonucleoprotein A', at 316,556 to 317,725 8499 mRNA_132: 8500 - K16944 SEPT7, CDC3 septin 7, at 318,013 to 320,034 8500 mRNA_133: 8501 - Hypothetical Protein, at 320,453 to 321,837 8501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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317,838 + +0.4
317,844 + -2.6
317,873 + -1.4
317,981 - -0.4
318,152 + -3.1
318,245 - 8500 mRNA_132 0.11 -0.4
319,417 + 8500 mRNA_132 0.69 -0.0
320,354 + +0.1
320,479 - -2.1
320,571 - +0.3
320,641 - 8501 mRNA_133 0.14 +0.2
320,771 + 8501 mRNA_133 0.23 -0.3
320,805 + 8501 mRNA_133 0.25 +0.5
321,020 - 8501 mRNA_133 0.41 -0.3

Or see this region's nucleotide sequence