Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_151

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8518 and 8519 are separated by 956 nucleotides8519 and 8520 are separated by 246 nucleotides mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375,753 to 378,108 8518 mRNA_151: 8519 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 379,065 to 379,994 8519 mRNA_152: 8520 - BLAST Midasin [Pteropus alecto], at 380,241 to 381,290 8520

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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378,076 - +1.1
378,289 - -0.3
378,324 - -3.1
378,327 + +2.7
378,428 + -0.4
378,443 - -0.7
378,465 + +0.2
378,468 - -1.0
378,500 + -0.9
378,610 - -1.2
378,611 - -0.5
378,613 - +1.4
378,614 + -0.8
378,614 - -0.8
378,616 + +0.2
378,618 + +0.8
378,619 - +0.5
378,624 + -0.4
378,629 - -1.2
378,639 - +0.4
378,658 + +0.2
378,663 - -0.1
378,759 - -0.0
378,763 + -1.0
378,769 + -0.7
378,794 - +0.3
378,797 - -0.1
378,797 - +1.9
378,799 - -0.4
378,800 + +1.5
378,804 + +1.6
378,808 + -0.4
378,812 + +0.6
378,813 - +1.2
378,825 + +2.3
378,827 - -1.6
378,829 - -2.0
378,831 - +0.3
378,875 + -0.0
378,954 - -0.9
378,957 - -1.2
378,959 - -1.0
378,994 + +1.2
378,995 - -0.6
379,116 - -1.4
379,136 + +0.3
379,136 + +2.7
379,139 - -0.5
379,145 - -0.1
379,156 - -1.5
379,268 - 8519 mRNA_151 0.22 +1.1
379,365 - 8519 mRNA_151 0.32 -1.1
379,553 - 8519 mRNA_151 0.52 -0.5
379,586 + 8519 mRNA_151 0.56 +0.4
379,596 - 8519 mRNA_151 0.57 +1.3
379,687 + 8519 mRNA_151 0.67 -0.9
379,998 + +0.6
380,264 + -1.9
380,274 + -1.0
380,418 - 8520 mRNA_152 0.17 +0.5
380,443 - 8520 mRNA_152 0.19 +0.6
380,443 + 8520 mRNA_152 0.19 -1.3
380,580 + 8520 mRNA_152 0.32 -0.5
380,719 + 8520 mRNA_152 0.46 +0.1
380,728 - 8520 mRNA_152 0.46 -0.2
380,732 - 8520 mRNA_152 0.47 -0.4
380,735 + 8520 mRNA_152 0.47 -0.8
380,736 + 8520 mRNA_152 0.47 +0.7
380,756 + 8520 mRNA_152 0.49 -0.1
380,760 - 8520 mRNA_152 0.49 +1.1
380,861 + 8520 mRNA_152 0.59 -0.0
380,878 + 8520 mRNA_152 0.61 -0.5
380,879 + 8520 mRNA_152 0.61 +0.1
380,885 - 8520 mRNA_152 0.61 +1.7
380,885 - 8520 mRNA_152 0.61 -2.5
380,887 - 8520 mRNA_152 0.62 +2.1
380,887 - 8520 mRNA_152 0.62 +0.3
380,889 - 8520 mRNA_152 0.62 +0.6
380,893 - 8520 mRNA_152 0.62 +0.2
380,903 - 8520 mRNA_152 0.63 +2.0
380,904 + 8520 mRNA_152 0.63 -2.6
380,904 + 8520 mRNA_152 0.63 +0.5
380,908 - 8520 mRNA_152 0.64 +1.1
380,908 + 8520 mRNA_152 0.64 -3.1
380,911 - 8520 mRNA_152 0.64 -0.3
380,912 + 8520 mRNA_152 0.64 +0.6
380,918 - 8520 mRNA_152 0.64 -0.3
380,925 - 8520 mRNA_152 0.65 -1.6
380,926 + 8520 mRNA_152 0.65 +0.7
380,952 + 8520 mRNA_152 0.68 -0.8
380,994 - 8520 mRNA_152 0.72 -1.1

Or see this region's nucleotide sequence