Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_167

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8534 and 8535 are separated by 543 nucleotides8535 and 8536 are separated by 451 nucleotides mRNA_166: 8534 - K07936 RAN GTP-binding nuclear protein Ran, at 409,327 to 410,564 8534 mRNA_167: 8535 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 411,108 to 413,532 8535 mRNA_168: 8536 - K01598 PPCDC, coaC phosphopantothenoylcysteine decarboxylase, at 413,984 to 414,971 8536

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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411,063 + -0.2
411,085 + +1.6
411,094 + -0.1
411,103 - -1.3
411,214 - -0.2
411,217 - -0.2
411,221 + -0.2
411,226 + +0.4
411,379 - 8535 mRNA_167 0.11 +2.9
411,385 - 8535 mRNA_167 0.11 +0.8
411,387 + 8535 mRNA_167 0.12 +0.4
411,397 + 8535 mRNA_167 0.12 +0.2
411,493 - 8535 mRNA_167 0.16 +2.7
411,536 + 8535 mRNA_167 0.18 -0.7
411,694 + 8535 mRNA_167 0.24 -2.1
411,719 + 8535 mRNA_167 0.25 +0.2
411,812 + 8535 mRNA_167 0.29 -0.2
411,823 + 8535 mRNA_167 0.29 -1.2
411,825 + 8535 mRNA_167 0.30 +0.1
411,827 - 8535 mRNA_167 0.30 +0.0
411,828 - 8535 mRNA_167 0.30 +0.4
411,893 - 8535 mRNA_167 0.32 -0.8
411,895 + 8535 mRNA_167 0.32 +0.4
411,969 - 8535 mRNA_167 0.36 -0.6
411,972 - 8535 mRNA_167 0.36 -0.3
412,324 - 8535 mRNA_167 0.50 -0.0
412,855 + 8535 mRNA_167 0.72 -0.3
413,108 - 8535 mRNA_167 0.82 -1.0
413,162 - 8535 mRNA_167 0.85 -0.3
413,412 - -2.0
413,841 - +0.9
413,855 + -1.0
413,872 + -0.5

Or see this region's nucleotide sequence