Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_176

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8543 and 8544 are separated by 675 nucleotides8544 and 8545 are separated by 171 nucleotides mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429,470 to 431,854 8543 mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432,530 to 433,945 8544 mRNA_177: 8545 - KOG4096 Uncharacterized conserved protein, at 434,117 to 434,779 8545

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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431,611 + 8543 mRNA_175 0.90 +0.5
431,682 + -1.0
431,765 + -0.7
431,780 - -0.8
431,801 - -1.1
431,802 + +0.2
431,817 - -0.5
431,839 + -1.2
431,942 + -0.2
431,952 - +0.4
431,964 + -1.0
431,969 + +0.6
431,969 - -0.9
431,973 + -0.3
431,974 + +1.9
431,978 - -1.2
431,986 + +0.2
431,988 + -2.5
431,990 + +0.0
431,991 + +1.7
431,991 - -0.8
431,997 + +1.3
432,005 - -0.1
432,005 - -0.1
432,013 + -1.4
432,031 + +2.1
432,044 + +1.9
432,045 + +0.1
432,049 + +0.5
432,049 + +1.1
432,054 + -0.1
432,068 + -0.4
432,070 + -0.9
432,072 - -0.3
432,072 - -0.4
432,073 + +1.5
432,079 + -0.8
432,085 + -1.1
432,089 + +0.9
432,093 + -1.9
432,111 + -0.3
432,150 + -0.6
432,151 + -0.0
432,155 + +0.2
432,160 - -0.8
432,167 + -0.5
432,168 + +1.9
432,174 - -2.4
432,181 - +0.7
432,188 + +1.7
432,191 - +0.6
432,193 - -1.1
432,194 + +0.1
432,197 - +0.8
432,202 + +0.2
432,204 - -0.3
432,209 - -0.6
432,211 - -1.1
432,213 - -2.0
432,222 - -0.1
432,224 + +1.1
432,230 + +0.6
432,231 + +0.1
432,267 - +1.8
432,274 - -0.4
432,290 - +0.8
432,330 - -1.0
432,336 - -0.7
432,336 + -0.4
432,337 + -1.0
432,347 + -3.4
432,351 + +1.0
432,365 - -0.3
432,373 - -1.1
432,378 + -0.0
432,388 + +0.3
432,815 - 8544 mRNA_176 0.20 +0.3
432,819 + 8544 mRNA_176 0.20 -0.7
432,830 + 8544 mRNA_176 0.21 -0.1
432,839 - 8544 mRNA_176 0.22 -1.2
433,126 - 8544 mRNA_176 0.42 -2.9
434,612 + 8545 mRNA_177 0.75 -0.3
434,620 + 8545 mRNA_177 0.76 -0.3
434,733 - -1.2
434,745 - -0.7
434,871 + +0.0
434,885 - -1.7
434,888 + -1.9

Or see this region's nucleotide sequence