Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_188

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8555 and 8556 are separated by 135 nucleotides8556 and 8557 are separated by 644 nucleotides mRNA_187: 8555 - Hypothetical Protein, at 454,535 to 455,556 8555 mRNA_188: 8556 - K14536 RIA1 ribosome assembly protein 1, at 455,692 to 459,820 8556 mRNA_189: 8557 - Hypothetical Protein, at 460,465 to 463,611 8557

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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454,864 + 8555 mRNA_187 0.32 -0.5
454,898 - 8555 mRNA_187 0.36 +0.1
455,005 - 8555 mRNA_187 0.46 +0.4
455,264 - 8555 mRNA_187 0.71 -0.3
455,266 - 8555 mRNA_187 0.72 -0.0
459,937 - -0.4
460,074 + +0.3
460,219 + +0.4
460,222 - +2.3
460,230 + -2.2
460,360 + +0.5
460,369 - +1.8
460,381 - +1.5
460,403 + -1.8
460,412 + +1.2
460,562 + -0.1
460,802 - 8557 mRNA_189 0.11 -2.0

Or see this region's nucleotide sequence