Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_237

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8604 and 8605 are separated by 53 nucleotides mRNA_236: 8604 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 580,930 to 582,126 8604 mRNA_237: 8605 - K08098 PIGZ, SMP3 phosphatidylinositol glycan, class Z, at 582,180 to 584,217 8605

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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581,493 - 8604 mRNA_236 0.47 -1.4
581,642 - 8604 mRNA_236 0.59 -0.2
581,950 - 8604 mRNA_236 0.85 +0.6
581,957 + 8604 mRNA_236 0.86 -0.4
582,034 - -2.4
582,076 + -3.5
582,105 + -2.4
582,106 + +2.1
584,244 + +1.1
584,442 + -1.0
584,566 + -1.3
584,582 - +2.4
584,589 - +0.8
584,597 - +1.3
584,606 + -0.4
584,612 - -2.0
584,615 - +0.2
584,730 + -0.8
584,904 + +0.2
584,921 + -0.6
585,039 + +0.5
585,170 - -0.0
585,178 - +0.1

Or see this region's nucleotide sequence