Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_263

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8630 and 8631 are separated by 832 nucleotides mRNA_262: 8630 - HMMPfam-Flavin reductase like domain-PF01613, at 628,698 to 628,997 8630 mRNA_263: 8631 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 629,830 to 634,837 8631

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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629,082 - +0.1
629,376 - +0.3
629,376 + +0.2
629,391 + -0.1
629,392 + -1.7
629,530 - +0.1
629,823 - +1.7
629,856 + -0.4
629,940 - -0.3
630,088 + -1.9
633,324 + 8631 mRNA_263 0.70 +0.3
634,033 + 8631 mRNA_263 0.84 -0.4
634,048 - 8631 mRNA_263 0.84 -1.2
634,056 + 8631 mRNA_263 0.84 +0.5
634,160 - 8631 mRNA_263 0.86 -0.4
634,160 + 8631 mRNA_263 0.86 -0.9
634,165 - 8631 mRNA_263 0.87 -0.1
634,179 + 8631 mRNA_263 0.87 -1.4
634,182 + 8631 mRNA_263 0.87 +0.9
634,192 - 8631 mRNA_263 0.87 +0.3
634,264 - 8631 mRNA_263 0.89 +0.7
634,374 + -0.9
634,400 - -3.0
634,621 + +1.2
634,656 + -0.2
634,759 - +0.5
634,766 + +1.7
634,783 + -0.4
634,787 - -0.3
634,917 + +0.3
634,917 + -2.1
634,918 - -0.6
634,920 - -0.5
634,927 - -1.4
634,929 + +0.0
634,930 - -0.0
634,933 - +1.4
634,933 + +2.8
634,936 - -1.5
634,940 + +0.4
634,940 - -0.6
634,941 - -0.2
634,941 + +0.1
634,943 - +0.2
634,943 - -0.3
634,947 - +1.1
634,947 + -0.1
634,952 + -0.2
634,952 + +1.9
634,955 - -0.5
634,955 - -0.8
634,960 - -0.7
634,964 + -0.2
634,965 - +0.6
634,966 + -0.4
634,968 + -0.2
634,975 - +0.8
634,987 + -0.1
634,990 + +1.1
634,998 - +0.0
635,047 - +0.5
635,056 + -0.1
635,169 + +1.2
635,179 + -0.9
635,185 - -0.4
635,193 - -0.2
635,204 + +0.3
635,209 + -0.2
635,211 + -0.1
635,325 - +0.1
635,329 - +0.3
635,362 - -0.2
635,772 - +0.5

Or see this region's nucleotide sequence