Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_265

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8632 and 8633 are separated by 286 nucleotides8633 and 8634 are separated by 141 nucleotides mRNA_264: 8632 - BLAST phosphoglycerate mutase-like protein [Sanghuangporus ..., at 636,296 to 637,192 8632 mRNA_265: 8633 - K00876 udk, UCK uridine kinase, at 637,479 to 639,717 8633 mRNA_266: 8634 - KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, at 639,859 to 640,522 8634

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
636,493 + 8632 mRNA_264 0.22 -0.0
636,494 + 8632 mRNA_264 0.22 -0.1
636,599 + 8632 mRNA_264 0.34 -0.6
636,764 + 8632 mRNA_264 0.52 +0.1
636,925 - 8632 mRNA_264 0.70 -0.0
636,936 - 8632 mRNA_264 0.71 -0.3
636,939 + 8632 mRNA_264 0.72 -0.1
637,072 + 8632 mRNA_264 0.87 +1.7
637,225 - -0.6
637,225 - +1.0
637,229 + -0.7
637,232 - +0.2
637,370 + +0.1
637,374 + -0.8
637,381 - -0.4
637,511 - -1.0
637,661 - -1.8
638,500 - 8633 mRNA_265 0.46 -0.8
638,564 - 8633 mRNA_265 0.48 -0.4
638,670 - 8633 mRNA_265 0.53 -1.6
638,837 - 8633 mRNA_265 0.61 +0.5
638,972 - 8633 mRNA_265 0.67 +1.4
638,993 - 8633 mRNA_265 0.68 -0.5
639,691 - +0.2
639,727 - -0.3
639,835 + -1.7
639,879 - +0.4
640,023 - 8634 mRNA_266 0.25 +0.9
640,581 - +1.1
640,584 + -0.4
640,589 - +0.1
640,598 + -0.1

Or see this region's nucleotide sequence