Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_286

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8653 and 8654 are separated by 728 nucleotides8654 and 8655 are separated by 253 nucleotides mRNA_285: 8653 - Hypothetical Protein, at 678,143 to 678,782 8653 mRNA_286: 8654 - SUPERFAMILY--SSF52047, at 679,511 to 681,745 8654 mRNA_287: 8655 - KOG1861 Leucine permease transcriptional regulator, at 681,999 to 683,854 8655

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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679,435 + -0.5
679,620 + -0.5
679,771 + 8654 mRNA_286 0.12 +0.5
679,772 - 8654 mRNA_286 0.12 +3.2
679,982 - 8654 mRNA_286 0.21 +0.5
680,590 - 8654 mRNA_286 0.48 +0.3
680,603 - 8654 mRNA_286 0.49 +2.2
680,644 - 8654 mRNA_286 0.51 -0.9
680,913 - 8654 mRNA_286 0.63 +0.4
681,633 - -0.3
681,653 + -0.4
681,792 + +0.3
681,796 + -0.0
681,814 - -0.2
681,814 - -2.4
681,828 + -0.8

Or see this region's nucleotide sequence