Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_321

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8688 and 8689 are separated by 57 nucleotides8689 and 8690 are separated by 175 nucleotides mRNA_320: 8688 - Hypothetical Protein, at 760,656 to 762,781 8688 mRNA_321: 8689 - KOG4317 Predicted Zn-finger protein, at 762,839 to 764,616 8689 mRNA_322: 8690 - Hypothetical Protein, at 764,792 to 765,740 8690

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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761,914 + 8688 mRNA_320 0.59 +1.8
762,182 - 8688 mRNA_320 0.72 -1.3
762,477 - 8688 mRNA_320 0.86 -0.3
762,501 + 8688 mRNA_320 0.87 -0.4
762,645 + +0.6
762,785 - +0.5
762,794 + +0.0
764,577 + +1.0
764,585 - +1.9
764,868 + -1.4
765,025 + 8690 mRNA_322 0.25 -0.5
765,286 - 8690 mRNA_322 0.52 +0.3

Or see this region's nucleotide sequence