Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_403

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8770 and 8771 are separated by 73 nucleotides8771 and 8772 are separated by 430 nucleotides mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936,053 to 937,253 8770 mRNA_403: 8771 - Hypothetical Protein, at 937,327 to 938,664 8771 mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939,095 to 942,093 8772

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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936,330 - 8770 mRNA_402 0.23 +0.1
936,331 - 8770 mRNA_402 0.23 -0.4
936,332 - 8770 mRNA_402 0.23 -2.8
936,343 - 8770 mRNA_402 0.24 +1.1
936,349 - 8770 mRNA_402 0.25 +0.7
936,368 + 8770 mRNA_402 0.26 -0.1
936,380 - 8770 mRNA_402 0.27 +0.2
936,381 - 8770 mRNA_402 0.27 -0.6
936,381 - 8770 mRNA_402 0.27 -1.0
936,384 + 8770 mRNA_402 0.28 +0.4
936,385 + 8770 mRNA_402 0.28 +0.1
936,396 + 8770 mRNA_402 0.29 +0.7
936,396 - 8770 mRNA_402 0.29 +0.2
936,429 - 8770 mRNA_402 0.31 -0.9
936,477 - 8770 mRNA_402 0.35 +0.1
936,512 + 8770 mRNA_402 0.38 +2.6
936,539 + 8770 mRNA_402 0.40 +0.7
936,542 + 8770 mRNA_402 0.41 +2.1
936,545 + 8770 mRNA_402 0.41 -1.1
936,550 + 8770 mRNA_402 0.41 +1.0
936,567 - 8770 mRNA_402 0.43 -1.2
936,578 + 8770 mRNA_402 0.44 -0.1
936,615 + 8770 mRNA_402 0.47 -0.5
936,633 + 8770 mRNA_402 0.48 +0.6
936,645 - 8770 mRNA_402 0.49 -1.4
936,649 - 8770 mRNA_402 0.50 +2.1
936,652 - 8770 mRNA_402 0.50 +0.3
936,664 + 8770 mRNA_402 0.51 -0.1
936,664 + 8770 mRNA_402 0.51 -0.2
936,669 + 8770 mRNA_402 0.51 -0.2
936,683 - 8770 mRNA_402 0.52 -0.4
936,683 - 8770 mRNA_402 0.52 -1.9
936,703 - 8770 mRNA_402 0.54 -1.4
936,712 - 8770 mRNA_402 0.55 -0.3
936,743 - 8770 mRNA_402 0.57 +0.7
936,750 - 8770 mRNA_402 0.58 +0.6
936,750 - 8770 mRNA_402 0.58 +0.8
936,772 + 8770 mRNA_402 0.60 +0.3
936,774 - 8770 mRNA_402 0.60 -0.7
936,775 + 8770 mRNA_402 0.60 +0.1
936,781 + 8770 mRNA_402 0.61 -0.7
936,790 + 8770 mRNA_402 0.61 -0.7
936,791 - 8770 mRNA_402 0.61 +2.0
936,793 - 8770 mRNA_402 0.62 -1.5
936,801 - 8770 mRNA_402 0.62 -1.3
936,809 - 8770 mRNA_402 0.63 +1.9
936,813 - 8770 mRNA_402 0.63 +0.4
936,817 - 8770 mRNA_402 0.64 +0.7
936,827 - 8770 mRNA_402 0.64 -1.7
936,829 + 8770 mRNA_402 0.65 +0.1
936,830 - 8770 mRNA_402 0.65 +1.7
936,832 - 8770 mRNA_402 0.65 -1.3
936,837 + 8770 mRNA_402 0.65 +0.9
936,887 - 8770 mRNA_402 0.69 +1.1
937,262 - -0.5
937,277 - +1.5
937,279 - -0.5
937,281 - -0.2
937,285 - -0.4
937,289 + +0.3
937,292 - -0.5
937,306 + +1.1
937,310 + -0.5
937,311 - +0.3
937,385 - +1.1
937,394 - +1.9
937,400 + +0.1
937,405 - +1.9
937,406 + -0.0
937,409 + -1.7
937,409 + +2.7
937,411 + +0.9
937,411 + -0.3
937,412 + +0.6
937,414 - +0.9
937,417 - -1.7
937,419 + -0.0
937,422 - -0.5
937,424 + -0.2
937,429 - -0.1
937,433 + -2.0
937,434 - -0.4
937,537 - 8771 mRNA_403 0.16 -0.8
937,541 - 8771 mRNA_403 0.16 +0.5
937,553 + 8771 mRNA_403 0.17 -0.9
937,562 + 8771 mRNA_403 0.18 +2.1
937,567 - 8771 mRNA_403 0.18 -1.6
937,580 + 8771 mRNA_403 0.19 +1.5
937,588 + 8771 mRNA_403 0.20 +1.6
937,607 - 8771 mRNA_403 0.21 -0.1
937,635 - 8771 mRNA_403 0.23 +0.1
937,646 + 8771 mRNA_403 0.24 -0.4
937,712 + 8771 mRNA_403 0.29 +0.2
937,712 + 8771 mRNA_403 0.29 -0.4
937,726 - 8771 mRNA_403 0.30 -0.4
937,750 + 8771 mRNA_403 0.32 +0.8
937,751 + 8771 mRNA_403 0.32 -0.5
937,775 - 8771 mRNA_403 0.33 +1.7
937,813 - 8771 mRNA_403 0.36 +0.0
937,830 + 8771 mRNA_403 0.38 -1.8
937,871 - 8771 mRNA_403 0.41 +0.3
937,931 + 8771 mRNA_403 0.45 -1.3
938,092 + 8771 mRNA_403 0.57 -0.6
938,188 - 8771 mRNA_403 0.64 -1.3
938,327 - 8771 mRNA_403 0.75 +0.3
938,351 - 8771 mRNA_403 0.77 -0.2
938,481 + 8771 mRNA_403 0.86 +2.3
938,532 - +0.0
938,545 + +0.2
938,621 + +1.8
938,654 + +0.3
939,082 - -0.6
939,087 + +0.4
939,114 + +0.3
939,190 + -0.7
939,393 + -0.8
939,592 - 8772 mRNA_404 0.17 -0.3

Or see this region's nucleotide sequence