Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_406

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8773 and 8774 are separated by 299 nucleotides8774 and 8775 are separated by 98 nucleotides mRNA_405: 8773 - KOG4563 Cell cycle-regulated histone H1-binding protein, at 942,527 to 943,923 8773 mRNA_406: 8774 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 944,223 to 945,484 8774 mRNA_407: 8775 - Hypothetical Protein, at 945,583 to 946,571 8775

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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943,970 + -0.4
944,088 - -0.3
944,089 + -0.9
944,100 + +1.5
944,125 - +0.4
944,137 - +0.1
944,305 + +1.7
944,470 + 8774 mRNA_406 0.20 +2.3
945,005 - 8774 mRNA_406 0.62 +1.1
946,018 - 8775 mRNA_407 0.44 +0.6
946,219 - 8775 mRNA_407 0.64 +1.9
946,360 + 8775 mRNA_407 0.79 +0.6

Or see this region's nucleotide sequence