Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_427

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8795 and 8796 are separated by 108 nucleotides mRNA_427: 8795 - Hypothetical Protein, at 994,561 to 995,537 8795 mRNA_428: 8796 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 995,646 to 996,920 8796

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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993,589 + +1.1
993,747 + -0.1
994,468 - +0.6
994,615 + -0.1
994,780 - 8795 mRNA_427 0.22 +2.5
995,165 - 8795 mRNA_427 0.62 +0.4
995,802 - 8796 mRNA_428 0.12 -0.2
996,424 + 8796 mRNA_428 0.61 -0.3

Or see this region's nucleotide sequence