Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_436

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8803 and 8804 are separated by 432 nucleotides8804 and 8805 are separated by 851 nucleotides mRNA_435: 8803 - K14845 RAI1, DOM3Z RAT1-interacting protein, at 1,008,072 to 1,010,135 8803 mRNA_436: 8804 - HMMPfam-CLASP N terminal-PF12348, at 1,010,568 to 1,012,798 8804 mRNA_437: 8805 - Hypothetical Protein, at 1,013,650 to 1,014,960 8805

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,009,804 + 8803 mRNA_435 0.84 -0.2
1,009,913 - 8803 mRNA_435 0.89 +1.7
1,009,963 + -1.8
1,010,042 + -0.4
1,010,062 + -0.0
1,010,197 - -2.3
1,010,484 - +0.0
1,010,484 - -0.9
1,010,490 - -1.3
1,010,500 + +0.3
1,010,503 + -0.4
1,010,504 + +0.8
1,010,507 + +0.6
1,010,515 + -1.5
1,010,554 - +0.4
1,012,459 - 8804 mRNA_436 0.85 +0.1
1,012,562 + 8804 mRNA_436 0.89 +0.0
1,013,177 + -1.0
1,013,252 - -0.3
1,013,328 - +0.4
1,013,758 + -2.0

Or see this region's nucleotide sequence