Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_473

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8840 and 8841 are separated by 237 nucleotides8841 and 8842 are separated by 714 nucleotides mRNA_472: 8840 - KOG0987 DNA helicase PIF1/RRM3, at 1,097,891 to 1,099,308 8840 mRNA_473: 8841 - K15255 PIF1 ATP-dependent DNA helicase PIF1, at 1,099,546 to 1,101,190 8841 mRNA_474: 8842 - Hypothetical Protein, at 1,101,905 to 1,103,305 8842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,100,831 - 8841 mRNA_473 0.78 -1.1
1,100,878 + 8841 mRNA_473 0.81 -0.8
1,100,960 + 8841 mRNA_473 0.86 -1.7
1,100,972 + 8841 mRNA_473 0.87 -1.0
1,100,994 - 8841 mRNA_473 0.88 +1.1
1,100,999 - 8841 mRNA_473 0.88 +0.2
1,101,001 + 8841 mRNA_473 0.88 -0.0
1,101,003 - 8841 mRNA_473 0.89 -0.7
1,101,510 + -0.2
1,101,663 - -0.4
1,102,164 + 8842 mRNA_474 0.18 +0.6

Or see this region's nucleotide sequence