Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_474

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8841 and 8842 are separated by 714 nucleotides8842 and 8843 are separated by 366 nucleotides mRNA_473: 8841 - K15255 PIF1 ATP-dependent DNA helicase PIF1, at 1,099,546 to 1,101,190 8841 mRNA_474: 8842 - Hypothetical Protein, at 1,101,905 to 1,103,305 8842 mRNA_475: 8843 - K15153 MED31, SOH1 mediator of RNA polymerase II transcription subunit 31, at 1,103,672 to 1,105,927 8843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,100,960 + 8841 mRNA_473 0.86 -1.7
1,100,972 + 8841 mRNA_473 0.87 -1.0
1,100,994 - 8841 mRNA_473 0.88 +1.1
1,100,999 - 8841 mRNA_473 0.88 +0.2
1,101,001 + 8841 mRNA_473 0.88 -0.0
1,101,003 - 8841 mRNA_473 0.89 -0.7
1,101,510 + -0.2
1,101,663 - -0.4
1,102,164 + 8842 mRNA_474 0.18 +0.6
1,102,286 - 8842 mRNA_474 0.27 -0.6
1,102,289 + 8842 mRNA_474 0.27 -1.3
1,102,411 - 8842 mRNA_474 0.36 -1.5
1,103,155 - 8842 mRNA_474 0.89 -0.8
1,103,175 + -0.2
1,103,872 - +0.2
1,104,023 + 8843 mRNA_475 0.16 -0.1
1,104,192 + 8843 mRNA_475 0.23 +0.2

Or see this region's nucleotide sequence