Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_508

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8875 and 8876 are separated by 347 nucleotides8876 and 8877 are separated by 196 nucleotides mRNA_507: 8875 - K19347 SUN1_2 SUN domain-containing protein 1/2, at 1,206,155 to 1,210,007 8875 mRNA_508: 8876 - K16466 CETN3, CDC31 centrin-3, at 1,210,355 to 1,211,163 8876 mRNA_509: 8877 - K11566 ASK1 DASH complex subunit ASK1, at 1,211,360 to 1,213,561 8877

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,209,409 + 8875 mRNA_507 0.84 -1.5
1,209,898 + -0.2
1,211,223 - -0.5
1,211,226 - -1.8
1,211,230 - +0.4
1,211,286 + -1.2
1,211,353 - -0.6
1,211,408 + -2.7
1,211,549 - -0.0

Or see this region's nucleotide sequence