Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_520

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8887 and 8888 are separated by 97 nucleotides8888 and 8889 are separated by 162 nucleotides mRNA_519: 8887 - KOG0767 Mitochondrial phosphate carrier protein, at 1,234,410 to 1,235,210 8887 mRNA_520: 8888 - Hypothetical Protein, at 1,235,308 to 1,236,592 8888 mRNA_521: 8889 - K15102 SLC25A3, PHC, PIC solute carrier family 25 (mitochondrial phosphate transporter), member 3, at 1,236,755 to 1,238,717 8889

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,234,308 + +1.6
1,234,786 - 8887 mRNA_519 0.47 +0.0
1,235,651 - 8888 mRNA_520 0.27 +0.4
1,235,680 + 8888 mRNA_520 0.29 -0.2
1,236,604 + +0.9

Or see this region's nucleotide sequence