Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_525

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8892 and 8893 are separated by 411 nucleotides8893 and 8894 are separated by 312 nucleotides mRNA_524: 8892 - KOG0519 Sensory transduction histidine kinase, at 1,249,927 to 1,253,514 8892 mRNA_525: 8893 - K01265 map methionyl aminopeptidase, at 1,253,926 to 1,255,834 8893 mRNA_526: 8894 - K02915 RP-L34e, RPL34 large subunit ribosomal protein L34e, at 1,256,147 to 1,256,994 8894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,253,504 - -0.2
1,253,593 - -0.7
1,253,793 + +1.0
1,254,524 - 8893 mRNA_525 0.31 +1.3
1,254,791 - 8893 mRNA_525 0.45 +1.7
1,254,842 - 8893 mRNA_525 0.48 +0.7
1,254,949 - 8893 mRNA_525 0.54 -0.8
1,255,262 - 8893 mRNA_525 0.70 -1.4
1,255,375 - 8893 mRNA_525 0.76 +0.3
1,255,406 + 8893 mRNA_525 0.78 -1.2
1,255,541 + 8893 mRNA_525 0.85 -2.9
1,255,692 - +0.2
1,255,701 + -0.1
1,255,702 + +0.3
1,255,824 - +0.4
1,256,006 - +1.7
1,256,014 + +0.9
1,256,015 + -1.6
1,256,030 - -0.1
1,256,408 + 8894 mRNA_526 0.31 -3.5

Or see this region's nucleotide sequence